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From time to time we have questions like this:
https://github.com/chanzuckerberg/cellxgene-census/issues/1121
Issues involved:
* TileDB Core, TileDB-Py, TileDB-R, and TileDB-SOMA (Python and R)…
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Surface:
System Curated List
Organ Curated List
Cell Class Curated List
Cell Subclass Curated List
Tissue General Curated List
Development Stage Curated List
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Add `include_cell_type_descendants` parameter to `get_anndata()`.
**Proposal**
```
adata = cellxgene_census.get_anndata(
census = census,
organism = "Homo sapiens",
feature_ids: …
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I've been using px.scatter_3d to generate 3D plots.
One thing I realized is that the dots supposed to be in the front are not always so. When rotating, which dots block the vision of which dots are d…
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Hi,
Is the reference Seurat object available somewhere? I would like to run TCellMap.R.
refSeuratObj
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#### Need
Some of the fields on the source dataset will be determined from DOI. Others will be determined from the HCA Data Repository project or the CELLxGENE collection. Other fields will need to b…
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Hi,
this is really great. I managed to adapt and use the Dockerfile (#102), but I'm getting errors in the VIP that seem unrelated
when running cellxgene like so
```
docker run -it -p 8050:8050…
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# Remove NeMO from splash content
Hey team, there was a misunderstanding about the data providers, so we need to update our splash content for the FTU Explorer. NeMO is not a data provider, so plea…
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### Need
Review the CELLxGENE census API to review the attributes that can be extracted/summarized for presentation on the Atlas Explorer.
In a Jupyter notebook
- [ ] Create a query to read the [HC…
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Hi!
I followed this tutorial [scvi-hugging-face](https://colab.research.google.com/github/scverse/scvi-tutorials/blob/1.0.4/hub/scvi_hub_intro_and_download.ipynb#scrollTo=89938623) to load pre-trai…