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Hi,
I have a question about finding circular contigs.
I want to remove contigs corresponding to the mitochondria and chloroplasts. So, I launched "purge_haplotigs" tool, that I found in one of …
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http://www.webalys.com/nova/ has some really good icons we currently miss. Some interesting ones:
- [ ] nuke
- [x] feather (also see #691)
- [ ] binocular (improve #476?)
- [x] skull (I hope we ca…
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The nature of ID method "taxonomic revision" has been bugging me for years because that term is a homonym. In taxonomy a "revision" is a special type of publication. Not all taxonomic publications are…
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Review the errors in the error log which can be due to API (C#)/UI (Java script). Fix the API errors indicated below and any others. Be sure to check error log after every defect fix or after impleme…
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- [ ] Support ability to do alignments
@njhillson could you point me to an existing tool that supports sequence alignments and maybe describe the sort of functionality we'll want the editor to be a…
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This one is VERY inconvenient because you have to pass abyssal stats to your friend along with the fit. I am mostly thinking about EFT-alike export-import because it's the one i see used the most ofte…
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Hi,
I'm keen to try RUFUS. Just having a bit of trouble getting started.
When running `runRufus` I'm getting errors like this:
/usr/bin/ld: cannot open output file /usr/local/installed/rufus/0.…
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Trying to use min_len gives:
python NanoSim/src/simulator.py linear -r ecoli.fa -c projects/cheny_prj/nanopore/paper/R9/1D/ecoli -n 500 --min_len 1500
./simulator.py [command]
[command] circular…
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Hello,
Spatial constraints in bacteria (e.g. localisation of components) are getting a lot of attention, since they affect drastically the performance of a circuit. Should SBOLv represent these?
…
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dna\_plasmid: dna and has\_function replicon\_function
see http://sourceforge.net/tracker/index.php?func=detail&aid=1894635&group\_id=177891&atid=886178 for replicon\_function
circular\_dna\_p…