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I am running processBismarkAln() function on a bam file obtained after bismark alignment. The bam file generated for paired-end nextseq data. The Command I used is as follows.
`processBismarkAln(lo…
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As requested in the [Google group](https://groups.google.com/forum/#!topic/kallisto-sleuth-users/Vq6MpLfObro), we should support other normalization factors. Here are some possibilities:
1. Take a fun…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/databio/COCOA
Confirm the following by editing ea…
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Dear Weilong,
I'm very happiness to find your nice software and paper.
In my own work, I have one question about the methylation level value.
I use this c…
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I made a new slim compilation file
https://docs.google.com/document/d/1LVu3e8R2GmqS63KhAcjSbkBMngJ-y0Nd8uyBuWw0gFk/edit
I'm not sure that I got everything in it.
This is the master list.
The…
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quite often you see experiments with phenotypes which show things like
decreased histone H3-K9 dimethylation at centromere outer repeat
this is refering to the endogenous repeat dg.
However, you s…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/giupardeb/EpiMethEx
Confirm the following by edit…
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Some data (e.g., immunomodulator gene annotations) won't be stored in the IRWG feature matrix. Need to enumerate these datasets and make sure they're available to the Shiny app.
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Hi Keegan, the paper introduced a very interesting idea and I'm curious to try it out.
Just one simple suggestion regarding the prerequisite packages: since I'm new to WGBS methylation data, I don…
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Right now only one round of diffmeth is incorporated into the report