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- Repository: https://github.com/reactome/ReactomeGSA
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- Repository: https://github.com/markziemann/mitch
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- Repository: https://github.com/transbioZI/BioMM
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In sparse methods, e.g., sPLD-DA (`splsda()`), could default values be set for arguments, that are not compulsory? In particular, could it be: `keepX = NULL`, `keepY = NULL`? It would be easier to fig…
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https://github.com/bioFAM/MOFA/blob/131593ab00e0d43234ba096277d21e7a8d0f1d8e/mofapy/core/build_model.py#L131
Here, the nodes argument is given as `nodes=init.getNodes()`. If you look at the lines a…
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- Repository: https://github.com/lauzingaretti/LinkHD
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Use data from Chen's original paper or placenta data. Get clarifying information from Steven.
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If we're to also illustrate copy number analysis, we'll need to save CNV data in the package, right?
since reading in CNV data took a long time, consider saving it as an RDS data in /data?
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This is the continuation of Issue #28. Now that we have the examples written, we will need to enhance, modify, and edit these examples. This is the "catch-all" issue for general vignette example edits…
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We do not provide information on what these options mean, so we should a) create the help doc and b) add a link to it on this page.
In addition, several of them have overlapping realms of applicab…