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>
> ----> 1 validator = Validator(adata, organism="human", **CellxGeneFields.OBS_FIELD_DEFAULTS)
>
> File /opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/cellxgene_lamin/_val…
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Hi,
I am trying to access specific datasets through the API. For collection of interest, I use the collection_id from the URL, and use request as shown in the documention, to get the dataset_ids fr…
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In the light of having a complete taxonomy for cell types of the CNS, we are reviewing terms present in the Jorstad paper (see citation below). This ticket aims to discuss a definition for VIP GABAerg…
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https://docs.google.com/document/d/13uaWbl_LkJXUd6_9P3UTc4sTOx40B8hIg0cBK8gOk6M/edit
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### Overview
**Tool**: ``
Feature: ``
**Description**: ``
- Current: ``
- Requested change: ``
### New events needed
`EXPLORER_ZOOMED`: `{zoomLevel: }`
- visitor clicked the zoom button …
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Jorstad, Nikolas L., Jennie Close, Nelson Johansen, Anna Marie Yanny, Eliza R. Barkan, Kyle J. Travaglini, Darren Bertagnolli, et al. 2023. “Transcriptomic Cytoarchitecture Reveals Principles of Human…
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- replace [tissue_mapper.py](https://github.com/chanzuckerberg/cellxgene-census/blob/e37605f86000d86e2a0f10a74f1e36d20fc9c0ba/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/tis…
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## Describe the Bug
While attempting to install cellxgene-census within a Docker image built from the python:3.9 base image for the linux/arm64 architecture, the installation process fails. The Doc…
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Context:
Slack: https://czi-sci.slack.com/archives/C0247APK621/p1711647089759669
Couple things to iron out towards Visium support. They may be caused by an embedding having null values for some of th…
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I am using the experiment data pipe in conjunction with the experiment_dataloader and noticed that len() on an ExperimentDatapipe returns the total number of samples and does not take in account batch…