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Hi, Jason,
Traceback is below. I know this looks like the traceback when one has sequences in the same fasta file that differ in the characters prior to the "/". However, I checked (by program) and…
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Hi,
I accidentally provided a fastq file, which caused an error in the first step of fc_run.py. But this did not stop the run, it continued a few more steps before it died. It would be nice if fc_run…
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Hi All,
We installed FALCON and ran fc_run.py on SGE, but it stopped in the middle of running.
Error log is shown as below,
```
2015-07-28 09:30:43,957 - pypeflow.controller - INFO - #jobsReadyToBe…
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Following up on https://twitter.com/johnomics/status/557816525923811328
I'm trying to use FALCON to assemble a small amount of PacBio data from the butterfly Heliconius melpomene. The genome size est…
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Hello
I was playing around with different ways to mask certain regions (e.g. repeats) prior aligning them with daligner and changed the DBdust code in order to replace dust-masking with repeat-masking…
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I am just testing out FALCON and was wondering what the primary benefits are compared to the standard workflow of HGAP > Celera > Quiver. Is there an application where one would be better than another…
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Hi all,
i was trying to assemble the genome of a fungal pathogen. i know that the genome is of about 36Mb but the assembly output produce only few contigs for a total genome size of 2Mb. can you help …
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Hello,
I try to start running the dazzler pipeline with C2-P4 PacBio reads.
I created the DB and split it into the default 400 Mb chunks (gave me 77 chunks from 62 SMRTcells).
When i try to execu…
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Hello,
can daligner be used to map PacBio reads to a fasta reference without using the DB step for the reference? Fitting the reference-fasta into the DB requires the sequence to be split into 65 Kbp…
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Hi,
I am getting segfaults when using DBdust. I pulled and compiled the latest code couple of minutes ago. Compiler is gcc 4.9.1. I tried before and after DBsplit. Is there any issue known? That is t…
fbemm updated
10 years ago