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Hello,
I am trying to save stacks (3D+time) with BDP2 after a rotation. The saving process only creates a volume and a projection folder, but nothing happens then. Alternatively, I am trying to save …
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We should think about loading the deleted genes with the `is_obsolete` flag to true. A lot of downstream code will need to change to check the flag so that obsolete genes aren't included in the query…
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**Background**
For the motivation behind the SpatialData project, see the [documentation](https://spatialdata.scverse.org) or [paper](https://www.nature.com/articles/s41592-024-02212-x).
Vitess…
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I have a dataset from Luxendo microscope that I can "stream" with the Big Data Processor. I am looking for a way to generate xml file compatible with BiGDataViewer for the purpose of loading it into B…
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Since the plugin works really well with my experimental data, I'm interested to run it through a whole directory to batch process them.
Is there any scope to write this in to an IJ1 macro?
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As things are, the GFF3 attributes `Dbxref` and `Ontology_term` are displayed in plain text in the "view details" window:
![image](https://user-images.githubusercontent.com/2037575/42296807-f8ee142a-…
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Hi,
I have a set of assemblies generated from metaSPAdes, and am getting a "KeyError" for only some of them when running VIBRANT. The contig names do not have any special characters or spaces. Thes…
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Hello,
I am trying to create a DECODE training parameters file, however when I try to run after hitting 'Use parameters from current SML file,' I get a matlab error saying:
![image](https://githu…
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Hi there,
Thanks a lot for creating these great resources. I am working on a project to build community models. Unfortunately, some of the species are not present in this repository. To be consistent…
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Reviewing the strategy to overcome Database Lock issue in the Rest API