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Hi all,
the bigg model database only contains a very old RECON from around 10 years ago, i.e., Recon1 which nobody is using any more. It would be great if the latest versions of RECON2 could be added…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/tnaake/MetNet
Confirm the following by editing e…
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@honnibal @ines
Hi,
I am currently working with clinical trails data to extract entities from the text. I am doing good when training my model in below pattern.
Currently training with below sh…
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Right now we have several approaches for modeling environmental shifts. As the types of shifts and number of processes grow, this is going to be hard to maintain. I think modeling the environment as…
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#### Problem description
> Running a benchmark for several models at once could be useful. Thinking for instance of the work of John Monk with the many Ecolis (several would fail on the default bio…
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follows https://github.com/Daniel-Mietchen/events/issues/321 .
The call is to open next week. More via
https://www.scidatacon.org/IDW2018/ .
See https://github.com/Daniel-Mietchen/events/blob/m…
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[esolver](http://www.dii.uchile.cl/~daespino/ESolver_doc/main.html) is an exact solver and cobrapy currently supports an interface to solve metabolic models using it. Since we are shifting to only usi…
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**memote** is reporting missing NGAM when the lower bound of R_ATPM is zero.
I think it should check for the presence of NGAM but not force a particular value.
The principle of constraint-based …
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This is a continuation of the discussion from pull request #207.
Hi @chriswmackey ,
First, please accept my sincere apology for taking me more than three weeks to reply.
I am busy with my regular jo…
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# Description
Basic model curation by reviewing GPR, confidence level, and metabolic reactions.
# Solution
- OR and AND annotations were corrected.
- New functions and genes were added.
- Confid…