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Right now only one round of diffmeth is incorporated into the report
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There is a line missing (black line of the cluster one) in the line graph. Any solutions? The cluster setting is same for histone marks and DNA methylation. Thanks
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/reese3928/methylGSA
Confirm the following by edit…
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After renewed run that resolved the [p-value issue](https://github.com/BIMSBbioinfo/pigx_bsseq/issues/42)
the latest run crashes as described below because snakemake `Could not find reference gene …
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This is a case where the SwaggerParser from 1.0.36 works fine but the conversion to the OpenAPI with 2.0.1 fails. Clearly the dates are in an unexpected format but I expect specs that parse in Swagger…
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Hi, @vobencha ,
This is the first submission of the data package for sesame. Per our discussion, I closed the previous issue of this package and resubmit the data package here first. I will submit th…
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Next to having a new ET pipeline for TCGA and other repositories (#491), it would be great to have the staging files (i.e. the ET output files) centrally available to all in the community. This to avo…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jordimartorell/mCSEAdata
Confirm the following by…
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The expected staging files format has changed a bit in #798 , so we need the new export of TCGA staging files to comply to that.
Logging this issue to keep track of the last issues to resolve.
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YGR196C DNA demethylation
yeast don't have DNA methylation AFAIK?
but I'm not sure the annotation would be correct for other species, its describing the ortholog of this protein
Lopez-Mos…