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Dear @bioconda/all,
to create the author list of the Bioconda paper, we need your full name and affiliation (include address). I hope to be able to include everybody who is part of the github team, p…
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Hello,
I am running latest version of canu on MacOS
I try to start trim the reads.
Here is the command that I put in:
```
sudo /var/log/MinKNOW/canu/Darwin-amd64/bin/canu -trim \
-p DB146_6_…
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Hi I am using Canu 1.6 on a remote cluster with SGE resources. I have no problem running Canu without using SGE.
The problem rises when I try to use SGE resource:
* firstly, Canu can't configure…
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Hi,
I've been trying use can-1.6 on metagenomic nanopore reads corrected using `nanocorr`. I seem to get the following error (log file pasted below). Am not sure if am missing the obvious.
Below…
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Hi everyone,
I'm trying to use mothur pipeline to analyze my metagenome data.
I have paired-end sequencing data of 16S rRNA gene.
I performed chimera.uchime() function in mothur.
However, it mak…
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Hi,
I am trying to run CANU 1.6 on a large genome (2.5 gb) with ~58x Sequel data. I am facing problem at correction stage.
Could figure out why it is failing repeated several times. CANU failed at …
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I'm running canu 1.6 released version.
I am running all 3 steps (correction, trimming, assembling) separately. I am assembling nanopore data.
I am trying to trim the corrected data that was produc…
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Hello,
I have a set of 122M sequences from a microbial metagenome that I am running through Xander. I ran build (k=45, min_count=5), find and search separately. The contig merge and clustering parame…
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Hi Benjamin
I am working on a sediment 16S dataset (V6-V8; Illumina PE 2x 300bp), using only the forward reads as the quality of the reverse ones are bad.
The number of sequence variants that D…
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Hi Chris,
I have generated the Cluster_scgs.freq file (file size 4109754) and when I tried the variant_filter.py script I got this error, do you have an idea of what is going on? N is null?
Thanks…