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Hi Brian,
I'm trying to clean up my PASA transcripts to later give them to EVM, following [this page](https://github.com/TransDecoder/TransDecoder/wiki#starting-from-a-genome-based-transcript-struc…
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Hi,
I used the Scallop results with TransDecoder. Next, I used bamCoverage to create RNA-Seq profile. I noticed that not always the first isoform is the best one compared to the RNA-Seq profile as co…
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Getting this error in the InterProScan part of the pipeline due to the TransDecoder peptides terminating with `*` to represent a stop codon. This occurs in EnTAP v0.10.3. I assume that it persists in …
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In the end, most of the results are the same, but I accidentally found that one transcript[>MSTRG.9.1] is different. Finally, I wrote a script to extract the same results as gffread!
`~/tools/Trans…
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Hi,
Scallop has done a really good job. I used the Scallop results with TransDecoder. Next, I would like to reduce the number of isoforms per gene. I noticed that not always the first isoform is the …
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Hi there,
Thank you very much for helping!
I am a newbie to bioinformatics. Currently, I am using TransDecoder to identify the ORF of some transcripts from highly repetitive region from a herp…
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Getting this error:
```
terminate called after throwing an instance of 'boost::exception_detail::clone_impl'
what(): boost::bad_any_cast: failed conversion using boost::any_cast
/projects/amp/p…
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This is a dependency of TransDecoder and PASA -- perhaps other packages. It seems to "install" "properly", however I think it is not compiling correctly as its non-functional.
Steps to reproduce:
…
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Hi Jon,
Unfortunately I decided to stare at my annotations again...and I think I could do better.
I was just wondering if there was a specific reason not to include PASA models beyond the ones t…
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Hello !
I have another comment regarding the daijin pipeline. When coming through the `TransDecoder.LongOrfs` step in the `daijin mikado` pipeline, it suddenly stops with the error "Sorry, Universa…