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Our lab's strength is do easily do meta analysis of existing studies. Currently, we can do that without much effort with all studies in Qiita. Sadly, not everyone is using Qiita. Thus, there are excit…
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- https://genomicsstandardsconsortium.github.io/mixs/soil_horizon/
- https://genomicsstandardsconsortium.github.io/mixs/horizon/
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see https://linkml.io/linkml-model/latest/docs/in_subset/
In some cases, the Python Dataclasses data loader silently repairs singe-valued/multi-valued mismatches, but we shouldn't count on that, be…
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Most of the Excel files (for individual packages and checklists) can be replaced by TSVs. They have no special formatting. The multi-sheet Excel file that includes directions could be replaced by onli…
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See https://microbiomedata.github.io/submission-schema/WaterInterface/
If I look at the linkml source for slot analysis_type for this class has both required and recommended are both set to true.
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aclum updated
3 months ago
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@sujaypatil96 @cmungall and I have worked very hard to
1. give the MIxS documentation pages a MIxS favor (instead of using LInkML jargon)
2. temporarily disable the slowest documentation feature…
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Running `make all` doesn't go through completely. The make process halts at this step:
```
model/schema/mixs.yaml: downloads/mixs6.tsv downloads/mixs6_core.tsv
$(RUN) python -m gsctools.mixs_con…
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## User story
> As a website user
> I would like to see all the relevant details about the terms in a given package/checklist
> So that I can easily determine which terms are required vs recommende…
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It would be interesting to adhere the datasets that are passed to this package to a certain standard, mostly for column names and column data types.
E.g. MIsS https://genomicsstandardsconsortium.gi…
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@wdduncan Based on discussion during the API tutorial with @dwinston earlier today, we thought it would be a good idea to test a quick update to the schema to ensure we could ingest additional files. …