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Hi,
I am using atac_dnase_pipelines for both DNase-seq and ATAC-seq. And DNase-seq is running perfectly without any issue. Unfortunately, I tried several times on my ATAC-seq data but never got i…
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Hi, Im trying to carry out a Pol II traveling ratio analysis ("The promoter-proximal bin is defined using a fixed window from 30 bp to +300 bp around the annotated start site. The transcribed region …
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Dear Jon,
I looked thoroughly at my previous funannotate results (derived a month ago) and found that **funannotate-p2g.py** seems to fail. As a result, finally, out of 500,000 proteins, tblastn ha…
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We could use a more specific child of "immunoprecipitation" for defining ChIP assays.
- editor preferred term: chromatin immunoprecipitation
- alternative terms: ChIP
- textual definition: An imm…
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we need to have some examples of how to model promoters of one gene driving the expression of another.
for example, there is a zfin construct [Tg(zp3:fsta,myl7:EGFP)](http://zfin.org/ZDB-TGCONSTRCT-…
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I noticed some important errors in the vignette which would affect all analysis. Firstly, the end of the promoter sequence is missing. The end of promoter shown on the [GeCKO Protocols](http://genome-…
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Dear Bioconductor Team:
We submit our package, TSRchitect, for inclusion in the Bioconductor package repository.
- Repository: https://github.com/BrendelGroup/TSRchitect
Best regards,
Tayl…
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Hi,
We need an OBI term for Chromatin immunoprecipitation (ChIP, not ChIP-chip or ChIP-seq etc). The existing immunoprecipitation OBI term is not suitable and the high throughput assays are outside…
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Some examples that cause rustc to overflow its stack:
```rust
assert_eq!(i64::max_value() % 2, 1);
assert_eq!(i64::min_value() % 2, 0);
```
Give error message at compile time:
```
thread 'r…
est31 updated
7 years ago
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Hi,
I have been running a few ATAQ files through your pipeline and all of them have run with no errors but one sample with 2 technical replicates, here is the command i have used
bds_scr D24 at…