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**Background**: The [CPTAC consotium](http://proteomics.cancer.gov/programs/cptacnetwork) has generated mass-spec proteomics data for [TCGA](tcga-data.nci.nih.gov) samples. cBioPortal supports integra…
jjgao updated
7 years ago
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Is it possible to optimize database creation? It'd be interesting to see where the bottlenecks are. Would Cythonizing certain parts of the code help with this, or is the bottleneck is purely at the sq…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/sbhattacharya3/IntramiRExploreR
Confirm the follo…
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sr320 updated
7 years ago
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Discussion from list:
```
> So here's my very vague question: what do I need to know? It seems that
> OBO_REL no longer exists, which is going to be a hassle for many
> Chado-related tools, which co…
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"Bioconductor (http://www.bioconductor.org/) is an open source, open development software project to provide tools for the analysis and comprehension of high-throughput genomic data. It is based prima…
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Hi, Peptide Shaker is crashing when I ask to use the PEP statistical analysis instead of FDR. I read a useful article on interpreting data and the PEP would be useful for me, since I just want to be s…
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**Project:**
### Background
[HGVS](http://varnomen.hgvs.org) is a syntax and set of recommendations used to represent sequence variants. The guidelines are broad and complex, and packages that imple…
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**Background**: Protein 3D structures are very useful when studying the effect of mutations in cancer. For example, oftentimes mutations tend to occur in the same 3D space. In the cBioPortal, we map a…
jjgao updated
7 years ago
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I was curious if you have any specific reason to only implement RDA taxonomy annotation and/but not blast ? People criticize RDA because of its lack of sensitivity.
Thanks.