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### Analysis Environment
- [x] Installation of `scverse` tools
- [ ] #19
### Analysis Steps
- **Preprocessing**
- [ ] #9
- [ ] #14
- [x] #4
- **Cell typing**
- [ ] #16
- [ ] #3
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Permetra de liers les info qui vont bien !
A faire après #969
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### Description of feature
https://github.com/coregenomics/tsshmm @omsai any thoughts on using this over groHMM? I also noticed there's a fork of groHMM that I'm considering switching to.
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Hi, I report a possible bug in `getfasta`.
It seems `-rna` option does not work for plus strand record when setting `-s` option.
Here is a test bed file (`test.bed`):
```
chr3 89235292 89235302 t…
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@pgaudet I think this is what you had in mind.
1. GO:0140818 mRNA 5'-phosphatase activity
2. GO:0004484 mRNA guanylyltransferase activity
3. GO:0004482 mRNA 5'-cap (guanine-N7-)-methyltransfer…
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I want to subset a cluster from archr project by running clustree. on this specific cluster and put it back to the archproject.
##### subset cluster9
idxSample
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Hello,
After running your software, I noticed that some beads were classified as originating from the same cell. Could you please explain how this determination is made? Specifically, I'm curious a…
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RNA-Sequencing (RNA-Seq) is a popular method for determining the presence and quantity of RNA in biological samples. In this 3 hour workshop, we will use R to explore publicly-available RNA-Seq data f…
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When I upload my file at File Uploader (specifically for RNA Counts), there's no option for me to select which sheet to read. However when I upload the metadata file, it allows me to select a sheet.
…
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- [x] Remove "(beta)" from title of track hub
- [x] Change "general cCREs" to "Cell-type Agnostic cCREs" and this should always appear as the first "folder" of the track hub display
- [ ] For select…