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When looking for documentation on how to set colormaps, I usually find the following ways to set a colormap
```
matplotlib.pyplot.copper()
matplotlib.pyplot.set_cmap(matplotlib.colormap.copper)
matpl…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon
**Describe the bug**
salmon takes days to process through 16 samples
**To Reproduce**
Tried running o…
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What is the best approach for `alevin`'s non-integer quantification data? Running it through `sctransform` gives multiple warnings like this:
`In dpois(y, mu, log = TRUE) : non-integer x = 2.33333…
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Hi
I am trying to run alevinQC dev version on the output of salmon 1.0.0.
`checkAlevinInputFiles` returns "v0.14", but when calling `alevinQCReport` it throws the error
`Reading Alevin output f…
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Hello,
Thank you for developing so nice R package `alevinQC.`
what is the definition of `"cell barcode collapsing"` in elvinQC R package
What is the meaning of the following figure?
Su…
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Hello,
What is the meaning of the following figure?
Summay plot of cell barcode collapsing.
Plot the original frequency of each cell barcode in the original whitelist against the frequency af…
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### Context
A user requested this dataset.
### Problem or idea
There are no processed samples available: https://www.refine.bio/experiments/SRP201683/single-cell-rna-seq-of-adult-mouse-heart-…
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Hi Charlotte,
I really like the report that is generated by alevinQC. Would it be possible to generate it for specific barcodes? My sample is quite heterogeneous so I filter out quite a few cells i…
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Hi @csoneson ! I was excited to find the alevinQC package because we are looking to replace Cell Ranger with salmon/alevin for our production work and also need a replacement for the web_summary.html …
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When trying to filter data using the Alevin tutorial, I am coming across an error when trying to filter the data. I'll post the error below. I am at a loss of how to fix this and nobody has been able …