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I have a PR for making the schema less modular: only nmdc.yaml and the imported mixs.yaml
In this case, I am mainly breaking out the Biosample class out into its own module. That required some modi…
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Suggest changing "*sample_name" to "sample_name". Having an asterisk in a table header feels wrong. If it's absolutely required by MIxS/NCBI, maybe we could add it back later.
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In working with Adina, it's been identified that there are some data as metadata slots that should be added to the NMDC schema to support this project.
Some of the slots below are already in NMDC …
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Raising this here as there are many repos that this issue touches, but it is all about governance
In the emo bon logsheets we have some columns that are supposed to contain lists
biomass
biomass_…
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**Describe the bug**
How do different INSDC repos use different linkml slots to key MIxS terms?
**Additional context**
ENA uses the "long name"(=title) to key MIxS terms
NCBI uses the "short nam…
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E.g. both systems have IDs for Illumina HiSeq 2500
* http://purl.obolibrary.org/obo/OBI_0002002
* https://scicrunch.org/resources/Any/record/nlx_144509-1/SCR_016383/resolver?q=hiseq&l=hiseq
I…
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closes
- #661
We can use `lint-linkml` to find schema elements that are lacking basic textual annotations.
@mslarae13 could you please (when your schedule allows)
- add descriptions to any of…
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Similar to the "NCBI Postgres database column to NMDC slot names" mapping file that we have in `nmdc-schema`: https://github.com/microbiomedata/nmdc-schema/blob/main/assets/ncbi_mappings/ncbi_pg_db_fi…
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`mixs_templates/` would contain XLSX files that consist solely of a header row, consisting of term **names**.
We should provide prominent documentation about hwo to use these files. For example, mo…