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I am running an instance of Riemann that's recieving on the order of 10k events/second. Of those events, each 20% of them is something that I want to coalesce to compute aggregations over. The current…
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https://github.com/swcarpentry/bc/blob/master/novice/shell/01-filedir.md has images that don't appear
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At the November lab meeting, we decided to try setting up a forum for Q&A aimed primarily at bootcamp attendees (but possibly open to others as well). http://software-carpentry.org/blog/2013/11/creat…
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As the title says, if I try to run Ray on only 2 cores, then it just doesn't work. Problem does not appear with 1, 3, or a higher amount of cores.
Tested command:
mpiexec -n 2 ./Ray -p /home/bastian/…
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Hi there, I have just finished the run using bcbio-nextgen. In this run, I only provided one sample and were using the latest GATK. However, at the end of the run, although I did get the output files,…
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Hello,
I am trying out the pipeline for my own data but I am not sure what is the best way to do it. We did two sequencing batches, where some samples failed to be sequenced twice. We want to find ho…
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Hiya,
I have the feeling that http://www.bioruby.org/rdoc/classes/Bio/FlatFile.html is unable to deal with fasta quality files. (It may be a good idea to add support for reading those as well as fastq…