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Dear developers of this great assembler,
I have a question concerning a weird k-mers histogram with 3 peaks for a definitely diploid fish genome. Please find the attached k-mers histogram as output…
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I found the following error in my pipeline log file. Please see attached stack trace.
could very well have to do with something else in my pipeline or data
Kind regards
Andy
```
+ vg inde…
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Hi, Thanks for your software.
I have more accurate genome size estimation with Genomescope v1.
V1:
http://qb.cshl.edu/genomescope/analysis.php?code=S3AEp7xDGl31cq4agjOa
V2
http://qb.…
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```
=== Error correction and assembling warnings:
* 0:00:07.339 96M / 8G WARN General (kmer_coverage_model.cpp : 367) Failed to determine erroneous kmer threshold. Thre…
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```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
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```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
-
```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
-
```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
-
This is an expected limitation in sourmash when working with signatures in Python data structures. Python dictionaries are restricted in the amount of data they can hold, regardless of available RAM.
…
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Dear authors,
I wonder how you define and compute (Boolean variable) a hit to database, e.g., plasmid_proteins?
Thanks