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Hi,
I generate a phyloseq file following the Bioconductor Workflow for Microbiome Data Analysis (https://f1000research.com/articles/5-1492/v2). Tree construction was done using dada2 and phangorn p…
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On microbiome feature,
1. choose any study (i've picked HMP phase 1 WGS)
2. navigate to the Downloads tab
3. exit out of the error (it's only joking 😄 )
4. choose whichever button has an assay (e…
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After downloading the software, you will use the data contained in the folder, which will also report an error
通过git clone下载完，用文件夹里面自带的KO.rela.xls和group.list运行，也会报错
my command:
perl -MList::Util=…
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Hi, if my metagenomic paired-end sequencing strategy is 2*150bp, should the LibrarySize in meta-data.txt be 150 or 300? I found that 150 or 300 will result in different 16S sequence numbers.
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I am no longer with Zymo and asking the microbiome team leadership about their desire to support Figaro in the future has gotten no answer. This is why I have been somewhat absent here. On a better …
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Hello,
I've run BiG-MAP to identify the gene clusters in some microbiome samples comparing health and disease.
There seem to be interesting patterns in my dataset of particular gene cluster type…
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Would be nice to have some test data that is not to big to reduce runtime but where we know what the expected result is. Even more important when it comes to the statistical analysis!!
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_Edited by Bart_
Check out other databases with food info.
For the time being we will use:
* OpenFoodFacts
* AECOC
From our research, we have found:
* **FDA:** https://ndb.nal.usda.gov/ndb/…
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The report is listed here:
Traceback (most recent call last):
File "./Script.py", line 4029, in
main(sys.argv[1:])
File "./Script.py", line 122, in main
output_log=open(split_output_…
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Not clear whether this belongs in uberon or ENVO.
Useful for composing allergic reaction classes