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Currently the libraries and headers that you install go like this in the installed files list:
```
...
include/RMF/utility.h
include/RMF/validate.h
lib/libRMF.so
lib/libimp_EMageFit.so
lib/libi…
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When a gene product binds to another gene product, do we need to
choose one side as enabling?
Should we do this:
GP1 -enables-> binding binding-has_input->GP2
GP2-enables->binding…
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> Overall, the presented manuscript demonstrates a significant enhancement in the beach water quality modeling community using molecular data to inform forecasting. Accordingly, this study is novel. L…
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Using the following code in program to reason an OWLOntology takes ~3 min:
```
OWLOntology MSO = ioHelper.loadOntology("MSO_unreasoned.owl");
OWLReasonerFactory reasonerFactory …
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When no active site is annotated, and the complex (or protein set) catalyzes a MF, then add the complex as the enabler of that function. The members of the complex (part_ofs) should get contributes_t…
goodb updated
5 years ago
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> (1) Would benefit from briefly stating the public health significance of using FIB or modeling FIB or molecular markers for the protection of human health. Just a statement would suffice about why t…
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Looking at the "Mike" script, there are some rules that may be useful that are not currently implemented.
http://geneontology.org/page/annotation-quality-control
http://geneontology.org/page/annot…
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Right now, the converter adds all of the locations of all of the entities involved in a reaction as values on function occurs_in location statements.
This is a change from the initial rule that o…
goodb updated
5 years ago
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# Describe the problem
I almost get equal numbers of 'real' (1509) and 'rev_' (1651) proteins in the final output file.
This seems to be traced back to the 'Mapped Proteins' column in the 'peptid…
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Currently the library can write the Python hierarchy out as an mmCIF file, but cannot do the reverse, constructing a hierarchy from an existing mmCIF file. The latter would be useful to assist in disp…