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Hi all,
I was trying to get snakepipes running on an Ubuntu 16.04, following the "Setting up snakePipes" from your readthedocs page, but when creating the environments I get the error(s):
```
…
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Refactor existing code:
* Replace use of `--dir_data` with command-line arguments. The script currently works as follows:
- develop branch: uses a `--dir_data=data/` argument to access and read …
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Test run on human_pancreas hvgs = 0
```
human_pancreas_norm_scvi_hvg0_err.txt
Traceback (most recent call last):
File "/home/icb/daniel.strobl/Benchmarking_data_integration/scripts/runIntegratio…
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# 组装 + 16S预测 + 16S blast
2020-03-18 12:57:01: sh /share/nas1/linhj/bin/pollution_check/R01_test/new_test2_R01/work_sh/assembly.sh && touch /share/nas1/linhj/bin/pollution_check/R01_test/new_test2_R01…
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Hi,
Running a mixed species (mouse+human) 10x sample, RNA-seq v3. I am following the mixed species ipynb example: https://colab.research.google.com/github/pachterlab/kallistobustools/blob/master/no…
mliiv updated
4 years ago
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Hi there
I'm wondering what the best advanced config options are for single-cell RNA-seq data. Our data is by nature very sparse (< 1x transcriptome coverage), but we have reason to think we'll find …
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The goal of this ticket is to prototype FAIRification process for datasets that in ArrayExpress and GEO but don't exist in either DCP or SCEA
Proposed datasets
https://www.ebi.ac.uk/arrayexpress/…
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Hello,
I read your recent paper in PNAS with great interest and am really excited by the elegant way in which it is able to detect gene interaction networks. I would like to apply this to my data …
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Dear Stephane,
With great interest I have read your recent publication in Genome Biology and seen phASER, which I would really like to use for my own work. So I was wondering if I could ask your ad…
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Hi Brad, Hi Rorky, I was wodering are planing to add 10x to the supported Platform for scRNA-Seq?
Thanks!
Alessandro