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Hi,
In Jbrowse/Apollo when I select my first chromosome all my genes are connected by 1 line as shown below:
 the Augustus training steps:
```
new_species.pl --species=asecodes_parviclava
etraining …
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Hi,
I used `agat_sp_complement_annotations.pl` and it created the following GFF3 file:
```
##gff-version 3
##sequence-region NbV1Ch01 1 187295484
NbV1Ch01 annotation remark 1 …
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Hi, I used the agat_convert_sp_gxf2gxf.pl tool, before fixation (no mRNA):
```
NW_019862870.1 | Gnomon | exon | 193034 | 199470
NW_019862870.1 | Gnomon | exon | 190861 | 190904
NW_019862870.1 | …
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Hey,
I'm having this Bio:Root Exception, what is the problem?
It does generate an output (with 1700 seqs), but I'd like making sure everything is running as supposed.
```
Problem ! The s…
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Instead of
```
NbV1Ch01 AUGUSTUS gene 97932 99714 0.06 - . ID=gene1
NbV1Ch01 AUGUSTUS mRNA 97932 99714 0.06 - . ID=mRNA1
Nb…
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From @mahesh-panchal:
The nextflow pipelines need small data sets that take less than 5 minutes to run.
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Hi,
I'm very interested in your pipeline, would make my life easier!
I'm trying to run the commands exactly as you describe but there are small discrepancies:
nextflow run -profile nbis,cond…
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Dear team,
I am trying to use gff3_sp_fix_feature_duplication.pl, and I encountered the following error.
Can't locate NBIS/GFF3/Omniscient.pm in @INC (you may need to install the NBIS::GFF3::Omnis…
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Hi!
I tried to run agat_sp_merge_annotations.pl on gffs from prokka and PGAP, but it fails. The gffs from these annotation tools contains multiple lines of comments in the beginning of the file, remo…