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NBISweden
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pipelines-nextflow
A set of workflows written in Nextflow for Genome Annotation.
GNU General Public License v3.0
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Format validation pipeline
#112
mahesh-panchal
opened
3 weeks ago
0
Update interproscan.sh
#111
mahesh-panchal
opened
1 month ago
4
Inconsistent InterProScan results between GAAS and manual run
#110
EmilieSmeets22
opened
2 months ago
10
issue with interproscan in functional pipeline
#109
EmilieSmeets22
closed
4 months ago
21
update nf-core modules fastqc, fastp, multiqc
#108
MartinPippel
closed
5 months ago
0
Update busco
#107
MartinPippel
closed
5 months ago
0
Update blast
#106
MartinPippel
closed
5 months ago
0
Interproscan
#105
MartinPippel
closed
5 months ago
0
Interproscan
#104
MartinPippel
closed
5 months ago
2
bump AGAT version to 1.2.0
#103
MartinPippel
closed
5 months ago
0
How to unset options in Interproscan?
#102
gbdias
opened
7 months ago
3
Patch issue100
#101
mahesh-panchal
closed
7 months ago
0
issue with merge_annotation_identifier in functional pipeline
#100
LucileSol
closed
7 months ago
0
abinitio pipeline not copying proper folder into /projects/references/augustus/config/species/
#99
LucileSol
opened
8 months ago
3
Add continue on error to CI workflows
#98
mahesh-panchal
closed
9 months ago
0
update actions
#97
mahesh-panchal
closed
9 months ago
0
Include local modules into nf-core
#96
mahesh-panchal
opened
9 months ago
1
Interproscan container is still flaky and causes issues with automated testing
#95
mahesh-panchal
closed
3 weeks ago
1
Update params.conda to conda.enabled
#94
mahesh-panchal
closed
8 months ago
0
Add ability to explore various values of AED and LD.
#93
mahesh-panchal
closed
8 months ago
7
Add parameter sweep possibility to abinitio training workflow
#92
mahesh-panchal
closed
9 months ago
0
Abinitio pipeline - MODEL_SELECTION_BY_AED -
#91
LucileSol
closed
1 year ago
1
The annotation_preprocessing new pipeline does not filter out the contigs less than 1000 nucleotides
#90
LucileSol
opened
1 year ago
7
Bioconda env for interproscan not working for the functional_annotation subworkflow
#89
LucileSol
opened
1 year ago
0
Increasing time for process_single
#88
aersoares81
closed
1 year ago
0
Update blastp.nf
#87
LucileSol
closed
9 months ago
0
Update README.md
#86
LucileSol
closed
1 year ago
0
Fix Hisat2 args
#85
mahesh-panchal
closed
1 year ago
0
Installing and running pipelines questions
#84
Brent-Saylor-Canopy
closed
1 year ago
3
Update Github actions workflows to use Node16 instead of Node 12
#83
mahesh-panchal
closed
9 months ago
0
Reduce high mem value to 120 from 200 GB
#82
mahesh-panchal
closed
1 year ago
0
Requested node configuration is not available in transcript_assembly
#81
fraca
closed
1 year ago
7
Extend default busco time to 2 days
#80
mahesh-panchal
closed
1 year ago
3
Update blast file name
#79
mahesh-panchal
closed
1 year ago
0
"WARN: There's no process matching config selector" warning message
#78
aersoares81
closed
1 year ago
3
The problem with installation.
#77
unavailable-2374
closed
1 year ago
1
Bump busco version
#76
mahesh-panchal
closed
1 year ago
0
Annotation workflow refactor
#75
mahesh-panchal
closed
1 year ago
3
Update README.md
#74
aersoares81
closed
2 years ago
0
Update Busco to 5.2.2 and container entrypoint fix.
#73
mahesh-panchal
closed
2 years ago
3
Fix MultiQC error
#72
mahesh-panchal
closed
2 years ago
0
Workflow refactor
#71
mahesh-panchal
closed
1 year ago
0
error with multiQC while running TranscriptAssembly.nf
#70
LucileSol
closed
2 years ago
3
Organelle Finder workflow
#69
ViktorSade
closed
1 year ago
5
update busco for AnnotationPreprocessing pipeline, problems with singularity
#68
LucileSol
closed
2 years ago
2
[AbinitioTraining] - Geneid
#67
Juke34
opened
2 years ago
2
[functional annotation]
#66
Juke34
opened
2 years ago
3
running on HPC
#65
Shicheng-Guo
closed
2 years ago
1
Add CITATION.cff
#64
mahesh-panchal
closed
2 years ago
8
Functional annotation pipeline failing when setting a path to a local copy of interproscan in uppmax
#63
apfuentes
closed
2 years ago
4
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