issues
search
NBISweden
/
pipelines-nextflow
A set of workflows written in Nextflow for Genome Annotation.
GNU General Public License v3.0
44
stars
18
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Format validation pipeline
#112
mahesh-panchal
opened
5 months ago
0
Update interproscan.sh
#111
mahesh-panchal
opened
5 months ago
5
Inconsistent InterProScan results between GAAS and manual run
#110
EmilieSmeets22
opened
7 months ago
10
issue with interproscan in functional pipeline
#109
EmilieSmeets22
closed
8 months ago
21
update nf-core modules fastqc, fastp, multiqc
#108
MartinPippel
closed
10 months ago
0
Update busco
#107
MartinPippel
closed
10 months ago
0
Update blast
#106
MartinPippel
closed
10 months ago
0
Interproscan
#105
MartinPippel
closed
10 months ago
0
Interproscan
#104
MartinPippel
closed
10 months ago
2
bump AGAT version to 1.2.0
#103
MartinPippel
closed
10 months ago
0
How to unset options in Interproscan?
#102
gbdias
opened
1 year ago
3
Patch issue100
#101
mahesh-panchal
closed
12 months ago
0
issue with merge_annotation_identifier in functional pipeline
#100
LucileSol
closed
12 months ago
0
abinitio pipeline not copying proper folder into /projects/references/augustus/config/species/
#99
LucileSol
opened
1 year ago
3
Add continue on error to CI workflows
#98
mahesh-panchal
closed
1 year ago
0
update actions
#97
mahesh-panchal
closed
1 year ago
0
Include local modules into nf-core
#96
mahesh-panchal
opened
1 year ago
1
Interproscan container is still flaky and causes issues with automated testing
#95
mahesh-panchal
closed
5 months ago
1
Update params.conda to conda.enabled
#94
mahesh-panchal
closed
1 year ago
0
Add ability to explore various values of AED and LD.
#93
mahesh-panchal
closed
1 year ago
7
Add parameter sweep possibility to abinitio training workflow
#92
mahesh-panchal
closed
1 year ago
0
Abinitio pipeline - MODEL_SELECTION_BY_AED -
#91
LucileSol
closed
1 year ago
1
The annotation_preprocessing new pipeline does not filter out the contigs less than 1000 nucleotides
#90
LucileSol
opened
1 year ago
7
Bioconda env for interproscan not working for the functional_annotation subworkflow
#89
LucileSol
opened
1 year ago
0
Increasing time for process_single
#88
aersoares81
closed
1 year ago
0
Update blastp.nf
#87
LucileSol
closed
1 year ago
0
Update README.md
#86
LucileSol
closed
1 year ago
0
Fix Hisat2 args
#85
mahesh-panchal
closed
2 years ago
0
Installing and running pipelines questions
#84
Brent-Saylor-Canopy
closed
2 years ago
3
Update Github actions workflows to use Node16 instead of Node 12
#83
mahesh-panchal
closed
1 year ago
0
Reduce high mem value to 120 from 200 GB
#82
mahesh-panchal
closed
2 years ago
0
Requested node configuration is not available in transcript_assembly
#81
fraca
closed
2 years ago
7
Extend default busco time to 2 days
#80
mahesh-panchal
closed
2 years ago
3
Update blast file name
#79
mahesh-panchal
closed
2 years ago
0
"WARN: There's no process matching config selector" warning message
#78
aersoares81
closed
2 years ago
3
The problem with installation.
#77
unavailable-2374
closed
2 years ago
1
Bump busco version
#76
mahesh-panchal
closed
2 years ago
0
Annotation workflow refactor
#75
mahesh-panchal
closed
2 years ago
3
Update README.md
#74
aersoares81
closed
2 years ago
0
Update Busco to 5.2.2 and container entrypoint fix.
#73
mahesh-panchal
closed
2 years ago
3
Fix MultiQC error
#72
mahesh-panchal
closed
2 years ago
0
Workflow refactor
#71
mahesh-panchal
closed
2 years ago
0
error with multiQC while running TranscriptAssembly.nf
#70
LucileSol
closed
2 years ago
3
Organelle Finder workflow
#69
ViktorSade
closed
2 years ago
5
update busco for AnnotationPreprocessing pipeline, problems with singularity
#68
LucileSol
closed
2 years ago
2
[AbinitioTraining] - Geneid
#67
Juke34
opened
3 years ago
2
[functional annotation]
#66
Juke34
opened
3 years ago
3
running on HPC
#65
Shicheng-Guo
closed
3 years ago
1
Add CITATION.cff
#64
mahesh-panchal
closed
3 years ago
8
Functional annotation pipeline failing when setting a path to a local copy of interproscan in uppmax
#63
apfuentes
closed
3 years ago
4
Next