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Hi,
I am using methcounts on my data transferred by to-msr. The program has been running for 2 days but output nothing. I have included -v in the command but no information has been printed out. My…
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I'm working with STRINGApp v 1.4.0 implemented in cytoscape 3.6.0 on a Mac. I have sets of Drosophila melanogaster genes and am building networks at confidence level 0.6, with no additional interactor…
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Hi all,
I am performing an analysis where I download all the genes in biological process (GO:0008150) and "metabolic function" (GO:0008152) for Drosophila melanogaster. I have noticed that there a…
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Session Info
```r
R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Arch Linux
Matrix products: default
BLAS: /usr/lib/libblas.so.3.7.1
LAPACK: /usr/li…
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Hello,
I am having problmes trying to generate the index of mouse GRCm38 from Ensembl.
STAR stops when.. sorting Suffix Array chunks and saving them to disk... is running without any error so my Geno…
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Hello,
I'm looking to quantify TE expression in Sorghum bicolor, and am currently using TEtranscripts. SalmonTE sounds like a very promising alternative, but was disappointed to find that it only s…
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I would like to convert matrices in GInteractions format into h5 format.
I tried hicExport with an example file:
hicExport --inFile matrix.GInteractions.tsv --outFileName test.h5 --inputFormat G…
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I've re-indexed the updated master branch and noticed that most of the tests for [NCBI top genes for E. coli (taxon id: 83333)](https://github.com/PathwayCommons/grounding-search/blob/master/test/util…
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Below are 42 cell lines with more specific annotations, mostly connecting to appropriate UBERON terms (in place of the generic 'organism_part')
Please let me know if I can provide additional informat…