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Per @harryhoch, we need to clarify this, @mellybelly @nlwashington @cmungall suggestions?
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```
What steps will reproduce the problem?
I have forward and reverse reads but the finished sequence is not being
created. The sequences are aligning fine but there is no "finished sequence". I
as…
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Hi,
Can anyone help me with this issue?
I am running MSMC on chr1 sequencing data of 4 individuals (two individual from one population). Therefore, I have eight haploid sequences in total. I prepare…
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Currently, the `Dataset` type is poorly specified, and included in `reads.avdl`. We have some comments like
```
TODO: Reads and variants both want to have datasets. Are they the same object?
```
Th…
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```
What steps will reproduce the problem?
I have forward and reverse reads but the finished sequence is not being
created. The sequences are aligning fine but there is no "finished sequence". I
as…
-
Hello,
Many sequences I analyse are not only composed of A, C, G, T or Us. When there is a nucleotide ambiguity, I can also find R, Y, S, W, K, M, M, D, B, H, V and Ns, and swarm return an error.
Are …
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Once the first stable release is reached.
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Trying ftp://ftp.sra.ebi.ac.uk/vol1/ERA172/ERA172924/bam/NA12877_S1.bam with 1.1.8 quip causes a core dump.
I have a tiny 30 line SAM file version of this BAM (it's just the header and 2 reads) and i…
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Which format should FASTQ files be in. I know there are at least some ways to allow for line breaks or not (the latter is more restricted and easier to parse). There should be a reference to every fil…
fungs updated
9 years ago
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What request to make?