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Hello,
I wanted to download Splice Junction files for the Primary Tumors of the TCGA-GBM project. I am runnin g R 4.0.0.
I used the command
`query The columns of the SJ.out.tab file have the follo…
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**Describe the bug**
Cell segmentation is not visible on the image and controls are not present in the spatial layers component when a dataset is loaded with a plain ome-tiff image, an ome-tiff image…
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In the last revision (and perhaps some earlier ones) the option -M in var2vcf_paired.pl doesn't seem to have any effect on the output. I cross-tested the outputs from the new previous tool with an old…
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A pharma company is interested in answering some questions about the capabilities of our oncoset data.
Here are the questions they have with associated deliverables:
1) Can we get total number of …
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Hello,
I am trying a model with nlmxir inside a for loop using foreach in order to parallelise the multiple runs of nlmixr R but I am getting this error:
Error in function() { : bad assignment: …
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```
Currently dicompyler will read the volume data directly from the calculated DVH
(as of r7db70b8ed0 ).
Prior to this, the volume was calculated in dvhdata.py. However, this volume
was inaccurate…
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**Is your feature request related to a problem? Please describe.**
In a validation of the GMS Lymphoid panel there's been a few variants in the reference samples that were filtered out in the VCF d…
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Hi,
When i use the function of music_prop.cluster(),i get the error:
> Est.pbmc.bulk = music_prop.cluster(bulk.eset = bulk.eset, sc.eset = SC.eset, clusters = 'celltype', group.markers = Ipmark…
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Ideally, we should account for WGD (baseline is 4 copies) when analyzing hyperploid tumors (e.g. TNBC5), which should lead to better model fit and prediction stability
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# Problem
When upgrading to MySQL 8 there is an error thrown by the schema provisioning step:
```
Running statements for version: 2.13.1
Executing statement: ALTER TABLE `clinical_event_data` …