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Hi,
I am trying to run GARD on several alignments before running PARRIS.
I launched GARD on a test alignment file as follows:
avincent@Grumpy:~/Desktop/SOFTWARE/hyphy-2.2.4$
mpirun -np 8 ./HYPHYMP…
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To quote [the NERN site](https://www.nern.nl/CT2016):
```
Deadline for submissions of abstracts for a presentation in one of the parallel sessions: Tuesday 13 December 2016
```
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Hi
I was wondering whether gubbins would be able to accurately detect recombination from a core gene alignment, implemented by Roary?
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```bash
...
libhts.a(bgzf.o): In function `inflate_block':
/share/tools/ngs-tools/BMFtools/htslib/bgzf.c:302: undefined reference to `inflateInit2_'
/share/tools/ngs-tools/BMFtools/htslib/bgzf.c:3…
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I joined the Matchmaker Exchange group late last year. After reading up the work done by GA4GH, I found the avro schema files confusing.
After several working group calls and many emails, I managed t…
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christoph noticed that if you specify a user scheme, PF reports the wrong number of subsets it will analyse (it behaves fine, just the output is misleading).
It's probably just a simple bug in the re…
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@JohnvanDam @krchristie @deustp01
As part of the cilia GO project, we need to make sure that GO and Reactome align on representation of ciliary processes.
Reactome recently worked on this area, this …
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Hello,
I am very interested in using htmd to run some adaptive sampling simulations.
However, the examples I have seen on adaptive sampling seem to deal only with ACEMD on a local GPU cluster.
I wo…
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There seems to be an issue if the path to a file read with the reader contains spaces. Might be related to #285
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