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# Describe the problem
Hello
I get the error message: " workspace not found" after finishing calculating spectral count. I saw an open issue about the same problem but fail to find the solution.
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For some reactions, like '[activated human TAK1 phosphorylates MKK3/MKK6](https://reactome.org/PathwayBrowser/#/R-HSA-450294&SEL=R-HSA-450346&PATH=R-HSA-168256,R-HSA-168249,R-HSA-168898,R-HSA-168164)'…
goodb updated
5 years ago
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In your statistical_testing analysis, following IRS normalization, the result of the decide tests function looks you might be overfitting your data.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC46…
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## Description of new feature
In the document JSON specified by the Reach service, currently interactions and participants have no type. That results in all interactions bein…
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# Describe the problem
**Fatal Error: workspace not found. Run 'philosopher workspace --init' to create one or execute the command inside a workspace directory"**
Using the MSFragger/FragPipe iss…
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The following simple example code models much more complex situation when OBMol have to be created programmatically from the data stored in the format of other molecular modeling tookit.
- It re…
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Is the definition of biological process missing something fundamental?
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A …
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**Description of the issue:**
The current name of the repository is too long and also redundant. We are about to make it public, and from the start it should have a memorable, short name. How about `…
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I have a TSV file training_abstracts.tsv when I use the function:
‘def test1():
with open('F:\\small paper\\ner\\data_file\\training_abstracts.tsv', 'r', encoding='utf-8') as f1:
line =…
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Same as: https://github.com/prvst/philosopher/issues/23
# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [x] bug report
- [ ] feature request
- [ ]…