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Why normalization by the following is required when I already include normalized and batch effect-adjusted data for the training?
deseq-vst
deseq-rlog
deseq-logcpm
tmm-logcpm
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As per the data normalization process, we should also be performing division by std after subtracting with mean. Why this is not the case here? Or Am I missing something?
https://github.com/bearpaw…
v1093 updated
5 years ago
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Related to issue #29. While the image has been scaled down so it is no longer confusing, it would be nice to instead show this kind of data normalization and batch correction on the running data examp…
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Hi,
I want to normalize my OTU table with CSS normalization so I can calculate beta diversity. I tried the code on the package documentation, but when I set useCSSoffset=TRUE, I get the error:
E…
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It would be nice to be able to see a description of a dependency when hovering over that dependency in a cabal file.
Packages already have such a description field, the tricky part of this issue is…
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Hello,
I would highly appreciate your help with the issues I have been facing when trying to run CHESS on my HIC files.
I have installed CHESS (0.3.6) and successfully tested it on the data prov…
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### Project Summary
Substation is a toolkit for routing, normalizing, and enriching security event and audit logs.
### Project Description
Substat…
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Hello!
Thank you again for posting the solution and answering my previosu questions.
As I am trying to recreate and learn from your solution, I am confused by the normalizatoin of the predictio…
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Hi,
I don't use Cellranger since we have BD Rhapsody data which is not compatible.
Is there a way to input the data into this tool after generating the count matrix, but before standard normali…
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Hi,
I am quite new to microbiome analysis and, frankly, quite at a loss as to how to proceed. So, I apologize is my question is naive or has already been answered elsewhere. I have just read a paper …