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**Use case:**
I want to use a bacterial genome as a custom reference genome. Loading and formatting it correctly involves several steps. If any part of the format is wrong, tools will fail. Notably,…
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# Genestorian: An Open Source web application for model organism collections
## Participants:
Project Lead: Manuel Lera Ramirez @manulera
Mentor: Sam Haynes @DimmestP
## Vision
### The…
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I suggest adding an optional `SRArun_acc_long` column to the metadata format to support hybrid datasets with short and long sequencing data.
We would need a supporting `sha256sumLongRead` column to…
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**Describe the bug**
When using matching DNA Helixes to create Plasmids the UI will say it gives +2 DNA points towards completion but they actually only give 1 point.
**Expected behavior**
Non Ge…
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Hi there,
I am new to genome assembly but have performed whole genome bacterial assembly of some clinical isolates that I have which are very resistant to multiple antibiotics. Can numbers of extra…
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Hello, we are trying to develop an alternative model for modified base Recognition with the tombo build_model estimate_alt_reference command, but we keep getting the error message
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Unlike pRPS3 and pTSA1 constructs pPGK1 construct do not correlate well with qPCR data. I am currently trying to verify if this is part of the data or an artefact introduce from the analysis pipeline.
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from pydna.ladders import PennStateLadder
from pydna.gel import gel
from pydna.dseqrecord import Dseqrecord
sample_1 = [Dseqrecord('A'*1000),Dseqrecord('A'*80),Dseqrecord('A'*50)]
sample_2 = …
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Need to determine if it is more appropriate to call the Scicrunch API directly from the UI or if the Rails app should proxy these calls (or we harvest the list and store locally like we do for ROR, me…
briri updated
3 months ago
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I was thinking it would be in one of the mapping or projection classes, but I couldn't find one. I don't want to have to rely on transcript sequence database lookups or the like, but simply provide t…
nh13 updated
5 months ago