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Hello,
I have written a script which uses biopython, obabel and pymol to loop over RNA-small molecule complexes and extracts the binding pocket and prepared the pdbqt fies for docking (Python 3.9.1…
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exemple 1: 305877706
https://app.datasubvention.beta.gouv.fr/search/305877706
qui retourne l'alerte "pas une association"
versus
https://app.datasubvention.beta.gouv.fr/association/305877706
qui af…
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In seurat 5, all run quite well with logNormalize, but got an error after I changed to SCT normalization with FastMNNIntegration and scVIIntegration. The codes and errors I got please find below:
c…
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**What is this request referring to?**
GO has a grouping term for regulatory non-coding RNAs: lnc, miRNA, piRNA, siRNA
Would SO consider creating an equivalent term?
**What is the name you would…
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Running: prodigal -i PROKKA_04122024\/PROKKA_04122024\.fna -c -m -g 11 -p single -f sco -q
[19:56:37] Excluding CDS which overlaps existing RNA (rRNA) at NC_000913.3:224958..225212 on + strand
[19:5…
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Thank you for good tools!
I would like to show RNA expression in `spatInSituPlotPoints` more easily to see.
When I make `point_size` larger value, it is difficult to distinguish cell shapes and…
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I got this error running `cnvkit.py import-rna`.
```
Traceback (most recent call last):
File "/Users/pontus.hojer/miniconda3/envs/cnvkit/bin/cnvkit.py", line 10, in
sys.exit(main())
Fi…
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We will want to support mutations of proteins (and other targets like RNA). I am not sure if we want to support this via a mapping method, or have something simpler like a residue ID and then the amin…
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Hi,
I have to combine several datasets. Batch correction is used for clustering and Dimensionality reduction. But for visualization and DEG analysis I will be using normalized RNA counts (Seurat `N…
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I have snRNA-seq dataset from literature called sc in S4 Seurat.
I converted it to SingleCellExperiment using this function:
sc.sce data->listData-> logcounts
logcounts is a S4 [2000x220170]…