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Hi,
I'm attempting to run a scanpy processed .h5ad file through scvelo but am running into the error pasted below.
I'm relatively new to the whole scene, any help is much appreciated. Let me know if…
PattF updated
4 years ago
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- Repository: https://github.com/fmicompbio/eisaR
- [x] I understand that by submitting my package to _Bioconductor_,
the package source and all review commentary are visible to the
general p…
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In the RNA Velocity tutorial (section on how to build a cDNA and intron index), I think an `-s` flag is missing in this command:
```
bedtools getfasta -name -fo introns.fa -fi species.primary_assm…
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Thank you so much for your great tool, I really like the possibility of specifying new technologies, RNA-velocity, and the upcoming feature barcoding option!
**Describe the issue**
I tried to spe…
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Hi Alex,
I want to test STARsolo for my 10x runs.
I have a question on counting the reads on overlapping features. How STARsolo handle this?
I heard that cellranger discard reads that fall into …
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Dear scVelo community. Great progress that you made in the RNA Velocity field.
I have been having a problem when I try to plot.
If I run:
`scv.pl.velocity(adata, var_names= "Snupn" , colorbar =…
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Hi! Thanks for the great work on kallisto and bustools - it's impressively fast and looks accurate so far.
Since kallisto already uses HDF5, would you consider an option to write the output of kal…
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Is this the right place to report mistakes in tutorials? Otherwise, please let me know where to report.
I think there is a mix up in the `bustools count` calls in the velocity tutorials (here: http…
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Hi,
Thanks for developing the great tools and continuing having new additions.
My question is how to properly implement RNA velocity to Seurat objects. Specifically, what reference should be use for…
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We have unused and untested RNA velocity code in #130.
Our plotting functions accept the `arrows` argument which expects a `Delta_` from velocyto.
I guess everything here is superseded by scvelo…