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Hi I am trying to predict gene structure using Finder.
And it seems this tool is better than PASA, MAKER,,,
So I am planning to get used to this tool.
However, the example data you shared, I coul…
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**What is this request referring to?**
the genome of a digital organism
**What is the name you would like SO to give the term?**
digital genome
**What is the definition that you would like for…
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i am seeing the error:
```
Error, cmd: bash -c "set -euxo pipefail; cat /refbuild/GRCh37/starfusion/../annotation/Homo_sapiens.GRCh37.75.gtf | egrep 'IG_V_gene|IG_C_gene|IG_D_gene|IG_J_gene' | awk '…
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Hello,
I have two large genome files and would like to use SibeliaZ. I recently read this on a biostars thread "Yes, by SibeliaZ you can get .gfa file out of a fasta file. They recently updated the…
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Is it possible to use cnvkit to analyze mitochondrion genome? Is it necessary to drop chrM from reference.cnn?
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Thanks for the nice tool! Is it possible for this tool run against the customed microbial genomes?
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Hi. I had used the method named "epic-effective" to calculate effective genome size ("https://www.biostars.org/p/185948/). My data is paired-end 150bp and species is Sus. Our final results is 0.9720…
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There is no flag or requirement to initialize run without specified Genome supplied in processing parameters.
If "hg18" is specified, then Rpackage "BSgenome.Hsapiens.UCSC.hg18" should be required t…
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I have been trying racon out on a plant genome assembled by miniasm (raw pacbio reads), the assembled genome size is 547 Mbp (expected size 750Mbp) and the .paf file is 300Gb. I have tried giving upto…
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Highlight bacterias of the same genome when you hover over it.