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See #22, #23, #26, #27, #28, #29 for the previous issues. cc @connorjburgin
The biggest disagreement here is around the platyrrhine generic splits. There is also a difference in family-level taxono…
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Hi, I have some confusion about the OMIM ontology you released here, and @matentzn suggested that I should raise a ticket. I used Protege to load the OMIM data, but the number of classes is 44729, far…
Lawhy updated
4 months ago
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This issue is moved from IEEE Gitlab CCO at https://opensource.ieee.org/cco/CommonCoreOntologies/-/issues/156
It was posted by [Ted Thibodeau Jr]
http://www.ontologyrepository.com/CommonCoreOnto…
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Currently, all runs converge to a normalized mean squared error of one. Ideally, this error should be zero.
These are both from run #50:
![nmse_in_time](https://user-images.githubusercontent.com…
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To provide variant level metadata for the new variant page, variant annotation needs to be generated for all variants we have any phenotypic information. We decided to drop GnomAD as a source of varia…
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The check performed by the `bids` command that all provided BIDS subjects have records in the corresponding phenotypic data is case sensitive, such that `sub-MNI05` and `sub-mni05` will be treated as …
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Hi Zeus,
Thanks for developing NBR! I have an unbalanced longitudinal dataset (paediatric sample) and I was hoping to use your toolbox. I have created an array of 246 x 246 x 409 (where 246 are the…
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- start at the "terminal" phenotypic features - HPO terms that have no descendants in the total set of phenotypic features targeted to test
- For each node
- check if we have _enough_ counts:
- we …
ielis updated
4 months ago
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Hello,
While working on https://github.com/geneontology/go-ontology/issues/15509
I came across some annotations that should be reviewed:
(incorrectly using the term OR could have a more specifi…
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I would like to be able to generate a list of genes associated to an example input e.g. "Ehlers-Danlos". If I type this in HPO it will return [44 disease results from OPPHA and OMIM](https://hpo.jax.o…