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Hi,
Very excited with Canu assembler as I'm tackling to look into repeat-rich regions in a fish genome.
I found in the output directory *.unitigs.fasta. What is it and how does it relate to *.co…
stomk updated
5 years ago
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Hello,
I have ran SALSA successfully in the past, but this time I encounter a problem : the program finishes after iteration 2 is over, and the assembly is almost not changed. Here is the log :
…
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Hello,
I am running Canu in a High Performance Computing cluster.
I used Canu for a bacterial genome assembly (draft) successfully.
I am trying to assemble another genome, but the job has failed…
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```
-- Finished on Wed Oct 9 13:21:16 2019 (lickety-split) with 225.025 GB free disk space
----------------------------------------
ERROR:
ERROR: Failed with exit code 1. (rc=256)
ERROR:
…
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Like others before me, I am experiencing an unexpected stop at iteration 2, but I don't think I am making the mistakes that were previously reported. I am running this on a machine with 64 CPU and 256…
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Hi,
I'm new to Github and wtdbg2. I have assembled a bacterial genome of size 6.3m using the command:
#!/bin/bash
/path/to/wtdbg2 -x ont -g 6.3m -t 16 -i /path/to/del_pobA_ICE_nanopore.fastq -fo…
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Hello,
I want to use proovreads for pacbio error correction, so when I tried using it for sample data, but it gave me error :
Binary '/opt/app/proovread/bin/../util/bwa/bwa-proovread' neither in P…
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```
[FATAL ERROR] Error opening file unitigs/unitigs.unique_rows.txt
HDF5-DIAG: Error detected in HDF5 (1.8.18) thread 0:
#000: /opt/conda/conda-bld/unitig-counter_1553808433058/work/gatb-cor…
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Hi!
I have finished assemblies for a couple of large genomes which I have finished recently. I was just perusing the files generated and I'm curious about the .dot files generated at each step (frg…
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Hi,
Could you please let me know how I can annotate significant variants with reference database. I have a significant variants file (file 1) generated from pyseer and a uniprot downloaded protein f…