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[P4 plan](https://app.mural.co/t/flexion6734/m/flexion6734/1713364091320/48ab98156be6f54770f5cde652da7cb5802a5dc0?sender=u7446126da2bb5c7cf0e55532)
```[tasklist]
### Tasks
- [x] Schedule brainstormi…
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Using `remfile` as below:
```python
import remfile
import h5py
import pynwb
import timeit
# URL to HDF5 NWB file
s3_url = "https://dandiarchive.s3.amazonaws.com/blobs/fec/8a6/fec8a690-2ece-44…
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### Description of the bug
I run the `bclconvert` demux on a 10x single cell and some fastq files are not copied / linked to the output folder, their md5sums not computed and `falco`, `fastp` process…
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Storage staking mechanism has been a topic of discussion for a while. There is general agreement that it did not serve the original purpose well as no one seemed incentivized to delete state from smar…
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Hi, congratulations for the project, great job.
I have some questions regarding the analysis of Chromium 10X format data.
From the documentations:
catt --tenX --f1 R1 --f2 R2 -o outputName
Chr…
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10x Barcodes with v2 chemistry work like this:
examples from `merge_barcodefiles_10x()`
looks like there [may be some confusion](https://github.com/pachterlab/sircel/blob/master/sircel/IO_utils.py#L…
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**Is your feature request related to a problem? Please describe.**
We need a go-to location for interested folks to find the [10x Projects Board](https://github.com/orgs/GSA-TTS/projects/38)
**Descri…
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Hi, Thanks for developing this helpful tool.
I am running mates on 10X data and I am on my first step which is:
`bam_processor.split_bam_files('10X', 20, 'sample_list_file.txt', 'bam_path_file.t…
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Hi,
I went through the whole tutorial (https://github.com/JEFworks-Lab/STdeconvolve/blob/devel/docs/visium_10x.md) with my data. Was wondering how to add these pixel groups of certain cell types as…
532at updated
1 month ago
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### Describe the bug
I understand this library is no longer maintained; however, I haven't tested this on tblite but wanted to add my results here for your reference.
When I run a "typical" calcul…