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Good day,
I have tried your tool and for many samples works like a charm. However, in some cases are not able to detect CNVs that are present (seen in WES and also other iCNV tools (e.g., copyKAT))…
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Hi All,
Am using the SNPsplit_genome_preparation command from SNPSplit v0.5.0 for human reference build 37 fasta file we use for WGBS analysis.
The SNP file I provided as input is the dbSNP v135…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/single-cell-genetics/cardelino
Confirm the follow…
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Hi,
I am looking at CCFs of mutations and today I got a bit of strange output for mutations in this sample where purity is 0.84, ploidy 3.49 estimated by PureCN. The mean coverage of the normal sampl…
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Aaron,
Thanks for sharing the new version for testing allelic imbalance. I'm starting to try to port over our WASP AI testing to WASP2. I thought I would start from `.merge.bam` files and recount …
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hi Yanyu,
We are very interested in trying out mixQTL on a dataset at UNC.
Are you planning to add support for interaction terms? E.g. we are interested in detecting genes significant for the l…
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https://mp.weixin.qq.com/s/B1l_-1nsnVmW-uHoqD7Dow
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/OzE6J9DxebsWcmiuvq8fBQ
ixxmu updated
2 years ago
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Hi authors,
I am applying your method in cancer sequencing samples, where large regions of of the chromosome may be affected by sub-clonal loss of heterozygosity (LOH). This results in allelic imba…
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Hi, we would like to "register" some managed variants.
Where can I read how do they work?
How can I submitt them?
Sorry to bother you but I can not find the information myself in the Scout user …