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On Wed, Aug 30, 2017 at 11:10 PM, Nuno Bandeira wrote:
Hi Raja,
It was great to touch base today - I'm attaching the [Nature Biotech paper](https://www.ncbi.nlm.nih.gov/pubmed/27504778) I menti…
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I've been seeing new format for modifications from recent versions of MaxQuant that cause a failure of `artmsProtein2SiteConversion`. Instead of the short `K(ph)`, MaxQuant is now using `S(Phospho (S…
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Fixed modifications, such as carbamidomethylation of C can be written as a global modification (section 4.6.2). For instance:
```
ATPEILTCNSIGCLK
```
However, it is not explicitly stated wheth…
RalfG updated
7 months ago
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**- Upload your log file**
[log_2024-11-12_09-46-50.txt](https://github.com/user-attachments/files/17756203/log_2024-11-12_09-46-50.txt)
**- Describe the issue or question:**
Hi,
I was trying …
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Hi,
Would it be possible to add a converter for Protein Prospector output?
Cheers!
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Testing the chemical formula and sequence of the residues should be sufficient to address this question and enable comparisons using different PTM databases.
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Hi, I have a question about the decoy generation. The method in your paper is "By default, this is done by replacing the fragment ion m/z values of the target precursor assuming the amino acids adjace…
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I find that
/home/zyrlia/zou/Manba/Mamba/envs/RFAA/lib/python3.10/site-packages/hydra/_internal/defaults_list.py:251: UserWarning: In 'covalent.yaml': Defaults list is missing `_self_`. See h…
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In the current Tide output format, terminal PTMs cannot be distinguished from side chain PTMs. I think we should represent them using a hyphen, so a modification of XXX on the first amino acid of PEP…
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Hello, thanks for writing this great program! I have downloaded the newest code and working through the test data provided. Everything has worked well, until I got to the compile function. This is the…