-
Is it applicable for two samples to calculate the variability in normal ATAC-Seq but not single cell sequence?
-
Hello,
I'm trying to run Augur on single-cell ATAC-seq data on human PBMCs from healthy vs disease subjects.
However, I am getting the following error: "no cell type had at least 20 cells in all con…
-
Hello,
I'm very new to machine learning and wanting to run Baskerville (as suggested by @davek44 on the Basenji page).
I was wondering if you had any beginner-friendly guidance for how to imple…
-
Hello, after reading your article I still have some questions about what "label embedding" is. The introduction of "label embedding" in the thesis is not much. Is it another kind of sequencing data be…
-
I am wondering if you have a step-by-step guide, clearly written to find ATAC-QTL? I find it difficult to use the tool to analyze based on the current documentation provided..
Thank you.
-
Hi @KenjiKamimoto-wustl122,
Thank you for sharing this useful package with us. I have already learned how to process a Bulk ATAC-seq data. However, I have 32 bulk ATAC-seq datasets here, and I am …
-
```
object
-
Hi Jacob,
I'm using ChromBPnet to examine some ATAC-seq data, and I have a general question about preprocessing.
In the data processing section from the original ATAC-seq paper (Buenrostro et al…
-
Dear muon-team,
I have converted my scATAC-seq SeuratObject to a mudata object but the information on the fragments files does not seem to be transferred. mdata.uns is empty.
My object is a merge…
-
Excellent work! I noticed that in your tutorial available at [https://slat.readthedocs.io/en/latest/tutorials/basic_usage.html], you provided two preprocessed datasets. Could you please provide additi…