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For example, after train a model for 3 epochs and save it as `model_3epoch.pkl`, how to load `model_3epoch.pkl` and train it for more epochs?
Besides that, if we train `model_3epoch.pkl` with the …
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Hello. Thank you for answering my question before.
Please teach me whether the program consider the edge's direction or not in calculating roc_curve .
In /BLEval/computeDGAUC.py line221, I can see…
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Hello author,
I am wondering what threshold you set for the F1-score. I saw in the codebase that you used sklearn.metrics.average_precision_score() to get the AUPRC. We need to set a threshold to c…
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Please add a description or tutorial how to load custom data.
I would like to use the clinical photosensitivity (PIH) data published by [Schmidt et al Chem. Res. Toxicol. 2019, 32, 2338−2352](https…
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### 🐛 Describe the bug
Recently, I've been dealing with a multi-label edge classification problem. In other words, an edge can have more than one label. So I implemented a simple GNN model to see i…
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This is what we discussed at the meeting today. I am just documenting on github issues for future reference.
![image](https://user-images.githubusercontent.com/5261545/39614505-3f8573e6-4f25-11e8-95…
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# Some thoughts about the evaluation of the PFM submitted by applicants
- **PFM**: position frequency matrix
- **PWM**: position weight matrix
See the [benchmarking protocols](https://ibis.auto…
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As I am attempting to go through the codebase, I noticed that both the finetuning and testing accuracy metrics are not computed correctly
There are couple main issue
1. In the trainer.py, the "bes…
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**Describe the bug**
Running external validation with recalibration in PLP version 6.0.4 adds additional evaluation results to `calibration_summary` and other tables per recalibration method. However…
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/drfuse$ python main.py
Seed set to 0
Traceback (most recent call last):
File "main.py", line 77, in
normalizer.load_params(normalizer_state)
File "/DATA/drfuse/utils/ehr_normalizer.py",…