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**Submitting author:** @peerherholz (Peer Herholz)
**Repository:** https://github.com/PeerHerholz/BIDSonym/
**Version:** v0.0.4
**Editor:** @oliviaguest
**Reviewers:** @deep-introspection, @chrisgorgo…
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Hi @akhanf ,
I tried running the hippunfold container on graham and I got this error below. I used `singularity shell` to get into the container and I navigated to `/opt/conda/lib/python3.7/site-pack…
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Hi @mgxd
I'm Sebastian, a collaborator of Sue's at Northeastern. I'm writing a paper that used BANDA resting state data off of openmind and I'm trying to hunt down the exact preprocessing methods t…
sfruf updated
3 years ago
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Not sure what the problem is, I observed that - on the cluster with singularity - the pipeline is failing when Function() (and IdentityInterface ?) nodes are used.
With the custom interfaces `"ski…
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Hello,
Does anyone have experience with custom atlases on ConnectomeMapper3? Keen to try and use the Brainnetome atlas and was wondering which files to use as the nifty and graphml files?
Aswin
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I am not sure if it is a problem in mriqc docker image itself, or may be it is due to the difference in singularity version used to produce 0.15.1 and 0.15.2 images (from docker images) for https://gi…
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Hi,
I am trying to create connectomes from in-house T1 and DTI data.
The pipeline throws an error at the connectome stage, see the attached log file from one dataset. I can provide the config file…
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The idea would be to be able the specify which interface is enabled in the parameter file such that the workflow is build accordingly. This will allow to be more flexible and skip processing steps.
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Hi
CMP3 seems to fail to create the DTI derivative.
Steps to reproduce:
1. Start CMP3 GUI RC2
2. Click on the first brain, config
3. Click on the second brain -> a FileNotFoundError appears imm…
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Hello,
I built a singularity image of CMP3 from the latest [Docker file](https://hub.docker.com/r/sebastientourbier/connectomemapper-bidsapp). When I try to run the file I am met with the following…