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My introduction & practical knowledge about linked data & triplestores etc, is via Wikidata.org . Might it be possible to mirror / sync the `labware-databank` ontology and individuals into Wikidata? T…
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I am sitting next to @JervenBolleman, he is showing me his conversion of swisslipids to obo/owl based on https://beta.sparql.swisslipids.org/. It would be great if we can agree on a canonical serializ…
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org.monarchinitiative.phenotefx.exception.PhenoteFxException: Malformed header line
#diseaseID diseaseName phenotypeID phenotypeName onsetID onsetName frequency sex negation modifier description pub…
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GO are planning to obsolete their 'cell death' term, which is the basis of the 'abnormal cell death' phenotype and increased/decreased children:
https://github.com/geneontology/go-ontology/issues/246…
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This was noticed in the HPO parser (and it's unclear if this is an issue with other parsers). The HPO parser has disease-phenotype data, with diseases having OMIM, orphanet, or decipher IDs.
HPO a…
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CAR has implemented new CACN IDs that represent CNV variants. We need to update the GCI/VCI so that it can accept these new IDs.
Example of new CACN ID in the CAR: https://reg.clinicalgenome.org/alle…
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The sample recording the presence or absence of a taxon that was taken during a spatio-temporal slice.
Overlaps strongly with AssertedDistribution, however those are derived from published accounts…
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_WARNING: long post below. I'm hoping to help us build a shared conceptual framework to guide ongoing API design, and given the underlying complexity and the number of different priors, don't know how…
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There are very few annotations remaining to close https://github.com/geneontology/go-ontology/issues/12739
assigned_by
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BHF-UCL | 13
BHF-UCL- ParkinsonsUK-UCL | 6
CGD | 9
FlyBase | 2
M…
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- [x] Severity modifier
- [x] Lazarin Tiers (manual annotations from Momoko)
- [x] Lazarin Tiers (auto)
- [x] age of onset
- [x] age of death
- [x] phenotype frequency
- [x] Evidence
- [x] Aspe…