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We use a heuristic right now for finding the correct packages. This is not always correct and it would therefore be nice to be able to ask the user, if we are choosing the correct package, if there ar…
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Hi,
I am just trying to read the metadata of an CZI file using python-bioformats, but I still struggle a bit. I can read most of the information, but not the one I actually need.
Immersion, LensNA, …
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I tried this in two environments, first with python3.9 and czifile installed, and then again in a fresh environment with python3.6. Same error.
`conda install -c bioconda python-bioformats`
retu…
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Hi guys,
Melissa Linkert pointed me towards you since she thinke this issue might be relateted to:
ttps://github.com/CellProfiler/python-bioformats/issues/23
Is this the case?
Sebi
Here is my ori…
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Hi,
you probably know that the new BioFormats 5.3.1 has some features that allow switching on/off reading tile images as a whole or as single series (like it was in the past). Additionally it can r…
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I've created a tiled Bigtiff image with an image pyramid using VIPS 8.7.0. I tried reading the image pyramid via an IIIF server I have written based on Bioformats. Bioformats is unable to see the im…
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Reported at https://github.com/IDR/idr-metadata/issues/696#issuecomment-2191691918
ResourceErrors from idr0043, affecting Datasets from e.g 9101 -> 14734:
E.g. viewing http://localhost:1080/webclient…
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The following Bio-Formats improvements to the SDT Reader should be ported to our SDT Format:
https://github.com/openmicroscopy/bioformats/pull/1067
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I'm getting a huge number of DEBUG and INFO level messages from bioformats when trying to read an image. Is there a way to suppress these? I wasn't able to find anything about it in the documentation,…
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Hey there,
Not sure if you prefer Image.sc forums for issues but here I am.
First, thanks for this promising pipeline !
I am using Windows 10, I installed ABBA for Fiji following the [step-by-ste…