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Please include your name, title, affiliation, and area of expertise! We will consolidate signatures into the PDF.
Thank you for your support!
If you don't have Github, please sign the Google She…
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Hi all, first, thanks for starting this project - we are considering NGFF / Zarr 3.0 for large 3D multichannel datasets of light-sheet microscopy brain data.
I'm wondering if there is any plan to c…
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@Mava04
Currently, there are two outputs in the table for the spot position. One is based on a difference of gaussian (DoG), the other is based on a centre of mass (CoM). Should we keep both? Which…
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Hello Ruben,
I am having an issue that I noticed had come up some time in the past but was never fully resolved (in https://github.com/rbnvrw/nd2reader/issues/6). When trying to open certain .nd2 …
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Moving the discussion from the mail thread here:
Which measurement should we use for the final score?
- Currently, we use the mean intensity per cell. From what I understand, the best alternative wo…
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@hansioan can you specify the format that you need?
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This is a meta-issue to collect ideas for plugins that we want to see sooner rather than later, once we have some plugin infrastructure in place. (Thanks @tlambert03! :grinning:) I'm writing this in p…
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Hi Robert,
Super cool collection of notebooks!
One of my tasks is to teach users about bio-image analysis and I am in awe of the beauty of this collection. Thanks a lot for putting it together …
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@d-v-b following up on our discussion in zoom just right now: would you have a recommendation for how to store the output of a spatial-omics analysis, i.e. millions of spots, where a spot has one (or …
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### Definition of done
- Add an episode at the end of the course with useful additional resources + links