sciai-lab batchlib issues

sciai-lab / batchlib

Batch procesing for high-throughput screening data

MIT License

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Add bioimage.io model spec

#146 constantinpape closed 3 years ago
0
Telesto

#145 constantinpape opened 4 years ago
0
Fix missing logs

#144 wolny closed 4 years ago
0
add roc curve plot script

#143 Steffen-Wolf closed 4 years ago
1
Adapt plot function to IgM; make sure that outliers are marked correctly

#142 constantinpape closed 4 years ago
8
Improve excel sheets value parsing

#141 wolny closed 4 years ago
0
Extend summary table with additional values

#140 wolny closed 4 years ago
0
Update well plot to display outlier types

#139 imagirom closed 4 years ago
0
Implement infected cell intensity based well qc WIP

#138 constantinpape closed 4 years ago
0
WIP: add p-values (of serum intensities in control vs. infected cells)

#137 imagirom closed 4 years ago
0
Prepare for proofreading effort

#136 constantinpape closed 4 years ago
2
Flatfield correction for new microscope

#135 imagirom closed 4 years ago
0
Fix DbResultWriter

#134 wolny closed 4 years ago
1
Add cohort ids for new plates

#133 wolny closed 4 years ago
1
Finalize exporting of score table

#132 constantinpape closed 4 years ago
2
Make networks more robust against localized artifacts

#131 constantinpape opened 4 years ago
1
Implement new bg estimation

#130 constantinpape closed 4 years ago
10
Boundary/foreground network configs

#129 wolny closed 4 years ago
0
Cell tables: add cell anchor

#128 tischi closed 4 years ago
6
Table naming pattern

#127 tischi closed 4 years ago
2
Use H1 wells to estimate background; use this for image level QC

#126 constantinpape closed 4 years ago
5
Finalize QC

#125 constantinpape closed 4 years ago
5
Add DB values to well export table

#124 wolny closed 4 years ago
1
Integrate voronoi nucleus segmentation in cell analysis workflow

#123 constantinpape closed 4 years ago
1
Grid search

#122 imagirom closed 4 years ago
0
Update training data scripts

#121 constantinpape closed 4 years ago
0
Store only selected tables

#120 wolny closed 4 years ago
0
Implement bg image writer

#119 constantinpape closed 4 years ago
0
Pass workflow_name and input_folder to DbResultWriter

#118 wolny closed 4 years ago
2
Try to fix plots for mean and sum workflow

#117 constantinpape closed 4 years ago
0
patient_type missing in DB for some plates

#116 tischi closed 4 years ago
1
specify labels when loading infected/non-infected indicator

#115 imagirom closed 4 years ago
0
Grid search

#114 imagirom closed 4 years ago
0
Cannot report issue from the Plate Viewer

#113 wolny closed 4 years ago
5
Enable feature calculation with nucleus

#112 constantinpape closed 4 years ago
0
Simplify bg parameters and write summary images again

#111 constantinpape closed 4 years ago
0
Add migration script to import elisa results

#110 wolny closed 4 years ago
3
Make 'plate/analysis_parameter' a top level attribute

#109 wolny closed 4 years ago
0
Migrate to production DB

#108 wolny closed 4 years ago
0
Remove _corrected prefixes; update table merging

#107 constantinpape closed 4 years ago
1
n_cells and n_valid_cells

#106 tischi closed 4 years ago
3
DB connection issue

#105 tischi closed 4 years ago
5
Improve reporting, plots and summary table

#104 constantinpape closed 4 years ago
4
Update cohort ids if automatically in DbResultWriter

#103 wolny closed 4 years ago
1
Cleanup

#102 constantinpape opened 4 years ago
2
Improve runtime

#101 constantinpape opened 4 years ago
6
Improve flat-field correction

#100 tischi opened 4 years ago
12
More summary functionality

#99 constantinpape closed 4 years ago
2
Keep track of all analysis pipeline parameter

#98 constantinpape closed 4 years ago
6
Pass plate_background as argument

#97 constantinpape closed 4 years ago
1