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sciai-lab
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batchlib
Batch procesing for high-throughput screening data
MIT License
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Add bioimage.io model spec
#146
constantinpape
closed
3 years ago
0
Telesto
#145
constantinpape
opened
4 years ago
0
Fix missing logs
#144
wolny
closed
4 years ago
0
add roc curve plot script
#143
Steffen-Wolf
closed
4 years ago
1
Adapt plot function to IgM; make sure that outliers are marked correctly
#142
constantinpape
closed
4 years ago
8
Improve excel sheets value parsing
#141
wolny
closed
4 years ago
0
Extend summary table with additional values
#140
wolny
closed
4 years ago
0
Update well plot to display outlier types
#139
imagirom
closed
4 years ago
0
Implement infected cell intensity based well qc WIP
#138
constantinpape
closed
4 years ago
0
WIP: add p-values (of serum intensities in control vs. infected cells)
#137
imagirom
closed
4 years ago
0
Prepare for proofreading effort
#136
constantinpape
closed
4 years ago
2
Flatfield correction for new microscope
#135
imagirom
closed
4 years ago
0
Fix DbResultWriter
#134
wolny
closed
4 years ago
1
Add cohort ids for new plates
#133
wolny
closed
4 years ago
1
Finalize exporting of score table
#132
constantinpape
closed
4 years ago
2
Make networks more robust against localized artifacts
#131
constantinpape
opened
4 years ago
1
Implement new bg estimation
#130
constantinpape
closed
4 years ago
10
Boundary/foreground network configs
#129
wolny
closed
4 years ago
0
Cell tables: add cell anchor
#128
tischi
closed
4 years ago
6
Table naming pattern
#127
tischi
closed
4 years ago
2
Use H1 wells to estimate background; use this for image level QC
#126
constantinpape
closed
4 years ago
5
Finalize QC
#125
constantinpape
closed
4 years ago
5
Add DB values to well export table
#124
wolny
closed
4 years ago
1
Integrate voronoi nucleus segmentation in cell analysis workflow
#123
constantinpape
closed
4 years ago
1
Grid search
#122
imagirom
closed
4 years ago
0
Update training data scripts
#121
constantinpape
closed
4 years ago
0
Store only selected tables
#120
wolny
closed
4 years ago
0
Implement bg image writer
#119
constantinpape
closed
4 years ago
0
Pass workflow_name and input_folder to DbResultWriter
#118
wolny
closed
4 years ago
2
Try to fix plots for mean and sum workflow
#117
constantinpape
closed
4 years ago
0
patient_type missing in DB for some plates
#116
tischi
closed
4 years ago
1
specify labels when loading infected/non-infected indicator
#115
imagirom
closed
4 years ago
0
Grid search
#114
imagirom
closed
4 years ago
0
Cannot report issue from the Plate Viewer
#113
wolny
closed
4 years ago
5
Enable feature calculation with nucleus
#112
constantinpape
closed
4 years ago
0
Simplify bg parameters and write summary images again
#111
constantinpape
closed
4 years ago
0
Add migration script to import elisa results
#110
wolny
closed
4 years ago
3
Make 'plate/analysis_parameter' a top level attribute
#109
wolny
closed
4 years ago
0
Migrate to production DB
#108
wolny
closed
4 years ago
0
Remove _corrected prefixes; update table merging
#107
constantinpape
closed
4 years ago
1
n_cells and n_valid_cells
#106
tischi
closed
4 years ago
3
DB connection issue
#105
tischi
closed
4 years ago
5
Improve reporting, plots and summary table
#104
constantinpape
closed
4 years ago
4
Update cohort ids if automatically in DbResultWriter
#103
wolny
closed
4 years ago
1
Cleanup
#102
constantinpape
opened
4 years ago
2
Improve runtime
#101
constantinpape
opened
4 years ago
6
Improve flat-field correction
#100
tischi
opened
4 years ago
12
More summary functionality
#99
constantinpape
closed
4 years ago
2
Keep track of all analysis pipeline parameter
#98
constantinpape
closed
4 years ago
6
Pass plate_background as argument
#97
constantinpape
closed
4 years ago
1
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