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Dear Clusterprofiler-Team,
being quite new to R I am struggling with the following problem:
I have prepared a comma-delimited Excel file (.csv) with gene expression data: first column Gene Symbol,…
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Hello,
I am following this link https://www.bioconductor.org/packages/release/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html to get introduced to ChIPseeker. I tried to install it and clusterProf…
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Hi, I am using a rstudio server with R/4.1.0.
And I ran into a problem installing HDO.db for DOSE:
>BiocManager::install("HDO.db")
'getOption("repos")' replaces Bioconductor standard repositories, …
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Hi,
I made a docker with zUMIs, and I got past the prior error, but now getting this error. I'm running it as a singularity image, so I know that disk space is not an issue. Any suggestions?
```
[1…
gevro updated
3 months ago
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I want to use the enricher function to enrich positively selected genes from a local made own database. But the code that properly worked last month breaks now. I've checked everywhere for solution, a…
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# Speed up over-representation enrichment analysis - A Bioinformagician
[https://jokergoo.github.io/2023/04/05/speed-up-over-representation-enrichment-analysis/](https://jokergoo.github.io/2023/04/…
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Hi,
I don't know if it's possible to implement gene expression level into ShinyGo, but it would be great to be able to indicate gene expression so that this could be taken into account the GOEA. Anot…
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### Prerequisites
+ [ ] Have you read [Feedback](https://guangchuangyu.github.io/dose/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)?
* [ ] make sur…
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library(clusterProfiler)
错误: package or namespace load failed for ‘clusterProfiler’ in loadNamespace(j
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Hi Guangchuang:
It seems that after I updated the clusterProfiler as well as enrichplot (clusterProfiler = v3.7.1, enrichplot = v0.99.15) I cannot use them to produce figures with the GO over-repre…