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Hi,
When running the CNV analysis on tumor #T275 using the `runCnvAnalysis` function, an error message occurred:
"13:24:54 Checking input for reference data.
13:24:54 Combining input and refer…
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### Need
As a clinician I want to find CNVs with as high resolution as possible. Currently some target capture bedfiles have regions with a very small size, usually 1 base, and which corresponds to…
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Talked to Lucas and Kerryn about CNV classifications
They use [2020 ACMG CNV guidelines](https://pubmed.ncbi.nlm.nih.gov/31690835/)
Biggest questions are:
* Is gene LOF
* If CNV is not whole gene, t…
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cvn_facets is in the blacklist on the current master branch: https://github.com/bioconda/bioconda-recipes/blob/6f666fd2c03adf396a0327a27b6ea14dacba0c55/build-fail-blacklist#L684
I am not able to bu…
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## Is your feature request related to a problem? Please describe
The pipeline stops when analysing a batch of samples has a sample with very few or no reads. This causes a problem when starting…
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I added label.dist=0.0000001 with the hope it would bring labels together but didn't happen. Is this a bug?
Not only are they too spaced out, but they overlap with other regions. Is there a way to r…
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We would like to store very large CNVs in the system. We currently can't read symbolic alts from VCFs (ie `````` or `````)
We can convert HGVS indels into very large ref/alt sequences, which has a nu…
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从istore安装的此插件,在1.0.0的时候,可以正确识别 RM500U-CNV 的tty(ttyUSB3),但是升级到1.4.0以后就识别错误,变成ttyUSB2,导致命令无法执行。
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This is more of a request, but I am trying to use the CNV track for visualizing genome-wide QTL.
The issue I'm having is that it accepts only one color instead of a vector of colors, so all radial …
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### Operating System
Other Linux (please specify below)
### Other Linux
rocky linux 8.9
### Workflow Version
v2.0.0-g52e3698
### Workflow Execution
Command line (Cluster)
### Other workflow ex…