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Hello,
I'm running a "funannotate compare" with 38 sequences. It's taking quite a while, due to ProteinOrtho - it's been 5 days already, and it's still going, even parallelized on 32 cores. I've re…
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Dear developer:
I built a pan-genome of our different individuals using Minigraph-cactus, and he did a very good job of finding a lot of key variation information.
But I was mistaken for ascens…
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I have test a small set of 2 maize genomes (B73 and Mo17) according to the pangenome pipeline
However, when I try to align each chromosome with Cactus, It comes to an error.
The command I have made…
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https://github.com/kbase/KbaseAppCatalogStatic/blob/59a1083ac0741d8ca9fde1a4d349ec13b5d02353/templates/index.html#L7
There's a few basic things we can do for SEO. One of them is to add a Meta ta…
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Gene symbols (e.g. SSH) are a bit degenerate with respect to ortholog loci. This presents a couple of challenges for TKBIO:
1) The nature of the differences is not explicit in the UI, that is, two …
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OrthoFinder version 2.5.2
**Can anyone help with this?**
`Writing orthogroups to file
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/tmp/_MEI6hTcHS/numpy/core/fromnumeric.py:3118: RuntimeWarning: Mean of empty …
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Hi
I`m running progressive cactus on a small number of genomes in order to test it, running the provided examples with evolverMammals do not cause any issue, however when I try to run it on my own I…
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**1. What were you trying to do?**
Map short reads on a graph with vg map --surject-to bam
**2. What did you want to happen?**
I'd like to add the sample & read group IDs in the BAM output
…
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To do:
- [ ] Co-assembly of ROCK samples