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Matrix does not support http://docs.sympy.org/dev/modules/core.html#sympy.core.basic.Basic.count
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Hi B,
I'm trying to generate the pca and from doing salmon i have a gene.counts.matrix and an isoform.counts.matrix.
im trying to execute
% $TRINITY_HOME/Analysis/DifferentialExpression/Pt…
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### Required prerequisites
- [x] Consult the [security policy](https://github.com/NVIDIA/cuda-quantum/security/policy). If reporting a security vulnerability, do not report the bug using this form. U…
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### Describe the bug
Just updated library from 2.12.0 to 2.15.3
Now I'm getting irrelevant closest items.
I expect for an anchor item to be closest to it by any metric (I use cos), you can see…
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### Steps to reproduce
The badge count on the icon is calculated by the server, not by the app, and so tends to be wrong.
### Outcome
#### What did you expect?
Reliable app icon badge count
#…
ara4n updated
1 month ago
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Hello, I hope you can guide me. Download Fastqs from SRA (SRR9843421), it is sequence data from Microwell-seq.
Use
then I used the Drop-seq protocol you posted. The DGE matrix with the following co…
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Hello,
I've succesfully setup server and bridge, I can chat with the bot and got "This room has been registered as your bridge management/status room. Send help to get a list of commands."
Also, i…
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Hey tradeSeq developers and users,
I'm currently using the package to understand differential gene expression between nodes and I am having trouble understanding the output. I'm interested in the R…
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I am looking to run Hotspot to discover transcriptional modules in a dataset containing integrated data from over 20 samples. All of the Hotspot vignettes I see online only analyze data from a single …
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Hi,
Thank you for this great tool. My data has high ambient RNA, and I want to get the counts matrix with ambient RNA removed. I wonder if or how souporcell can do this?
Thanks!